Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02359.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 511

Length: 853
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32


Found at i:433 original size:20 final size:20

Alignment explanation


    Indices: 408--457  Score: 100
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        398 AGATATTGTA

                                
        408 TGCGTAGAGTATATTCTGTG
          1 TGCGTAGAGTATATTCTGTG

                                
        428 TGCGTAGAGTATATTCTGTG
          1 TGCGTAGAGTATATTCTGTG

                      
        448 TGCGTAGAGT
          1 TGCGTAGAGT

        458 GTGTAATCTC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   30  1.00

ACGTcount: A:0.20, C:0.10, G:0.32, T:0.38


Consensus pattern (20 bp):   
TGCGTAGAGTATATTCTGTG
Done.