Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02360.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3376
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31


Found at i:2775 original size:11 final size:11

Alignment explanation


    Indices: 2744--2790  Score: 51
    Period size: 11  Copynumber: 4.4  Consensus size: 11

       2734 TATAAAAGTG

                     * 
       2744 TAAAGAAAAAC
          1 TAAAGAAAACC

                       
       2755 TAAAGAAAACC
          1 TAAAGAAAACC

              *       *
       2766 TATAGAAAACT
          1 TAAAGAAAACC

              *        
       2777 TAGAGAAAA-C
          1 TAAAGAAAACC

                
       2787 TAAA
          1 TAAA

       2791 CCTAAACTAA


Statistics
Matches: 30,  Mismatches: 6, Indels: 1
        0.81            0.16        0.03

Matches are distributed among these distances:
  10    3  0.10
  11   27  0.90

ACGTcount: A:0.64, C:0.11, G:0.11, T:0.15


Consensus pattern (11 bp):   
TAAAGAAAACC
Done.