Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02372.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1921
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Found at i:112 original size:3 final size:3
Alignment explanation
Indices: 104--128 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
94 TGGTACTCGT
104 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
129 GCTATTATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:997 original size:68 final size:68
Alignment explanation
Indices: 913--1049 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
903 TTGTTTTAAG
913 TTCTTTGATAAGCTATTGAAGATCATGATATCAATATGAAGCAAAGGACCTGTCTGAACACAACC
1 TTCTTTGATAAGCTATTGAAGATCATGATATCAATATGAAGCAAAGGACCTGTCTGAACACAACC
978 CAA
66 CAA
981 TTCTTTGATAAGCTATTGAAGATCATGATATCAATATGAAGCAAAGGACCTGTCTGAACACAACC
1 TTCTTTGATAAGCTATTGAAGATCATGATATCAATATGAAGCAAAGGACCTGTCTGAACACAACC
1046 CAA
66 CAA
1049 T
1 T
1050 AACTTTAAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (68 bp):
TTCTTTGATAAGCTATTGAAGATCATGATATCAATATGAAGCAAAGGACCTGTCTGAACACAACC
CAA
Done.