Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02374.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2896
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:123 original size:17 final size:19

Alignment explanation


    Indices: 89--125  Score: 51
    Period size: 17  Copynumber: 2.1  Consensus size: 19

         79 TTTCTCCTTC

                     *         
         89 TCTCTCCCCTTCCTCTTTT
          1 TCTCTCCCCATCCTCTTTT

                               
        108 TCTCT-CCCATCC-CTTTT
          1 TCTCTCCCCATCCTCTTTT

             
        125 T
          1 T

        126 TTTTTCTCTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  17    6  0.35
  18    6  0.35
  19    5  0.29

ACGTcount: A:0.03, C:0.46, G:0.00, T:0.51


Consensus pattern (19 bp):   
TCTCTCCCCATCCTCTTTT

Found at i:127 original size:19 final size:19

Alignment explanation


    Indices: 89--126  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         79 TTTCTCCTTC

                    * *        
         89 TCTCTCCCCTTCCTCTTTT
          1 TCTCTCCCATCCCTCTTTT

                               
        108 TCTCTCCCATCCCT-TTTT
          1 TCTCTCCCATCCCTCTTTT

             
        126 T
          1 T

        127 TTTTCTCTCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.03, C:0.45, G:0.00, T:0.53


Consensus pattern (19 bp):   
TCTCTCCCATCCCTCTTTT
Done.