Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02387.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4706
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:4222 original size:22 final size:23

Alignment explanation


    Indices: 4186--4234  Score: 66
    Period size: 22  Copynumber: 2.2  Consensus size: 23

       4176 CAACATGCTC

                    *          *   
       4186 ATACACATTGACAATTTACGTTT
          1 ATACACATAGACAATTTACATTT

                                   
       4209 ATACAC-TAGACAATTTACATTT
          1 ATACACATAGACAATTTACATTT

                 
       4231 -TACA
          1 ATACA

       4235 ATCCATGTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  21    4  0.17
  22   14  0.58
  23    6  0.25

ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37


Consensus pattern (23 bp):   
ATACACATAGACAATTTACATTT
Done.