Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02396.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3363
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28


Found at i:254 original size:5 final size:5

Alignment explanation


    Indices: 244--268  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

        234 AGAGAGATAA

                                         
        244 AAGAG AAGAG AAGAG AAGAG AAGAG
          1 AAGAG AAGAG AAGAG AAGAG AAGAG

        269 GGGGGTTATC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00


Consensus pattern (5 bp):   
AAGAG

Done.