Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02397.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3982
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3772 original size:6 final size:7

Alignment explanation


    Indices: 3755--3779  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       3745 GCTGACATCT

                   
       3755 TTTTTCC
          1 TTTTTCC

                   
       3762 TTTTTCC
          1 TTTTTCC

                   
       3769 TTTTTCC
          1 TTTTTCC

                
       3776 TTTT
          1 TTTT

       3780 GGATTTTCGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (7 bp):   
TTTTTCC
Done.