Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02406.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38


Found at i:205 original size:24 final size:24

Alignment explanation


    Indices: 157--205  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        147 TTTATGGGGT

                   *       *   **   
        157 TAGAGTCTAAGCTTTCTTTGGCCC
          1 TAGAGTCCAAGCTTTATTTCCCCC

                                    
        181 TAGAGTCCAAGCTTTATTTCCCCC
          1 TAGAGTCCAAGCTTTATTTCCCCC

             
        205 T
          1 T

        206 GTGGAGACGG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37


Consensus pattern (24 bp):   
TAGAGTCCAAGCTTTATTTCCCCC

Found at i:954 original size:60 final size:61

Alignment explanation


    Indices: 847--968  Score: 228
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        837 GTTCGAGGGT

                         *                                               
        847 GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
          1 GTTCTTTTTTCTGGTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG

                                                                         
        908 GTTCTTTTTTCTGGTTCTTTTTGTTCACTGCCC-AATTGGGCGTTCATATGTCCATGCTTG
          1 GTTCTTTTTTCTGGTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG

             
        968 G
          1 G

        969 ACCTTTGTTT


Statistics
Matches: 60,  Mismatches: 1, Indels: 1
        0.97            0.02        0.02

Matches are distributed among these distances:
  60   28  0.47
  61   32  0.53

ACGTcount: A:0.11, C:0.21, G:0.20, T:0.48


Consensus pattern (61 bp):   
GTTCTTTTTTCTGGTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
Done.