Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02409.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2128
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33


Found at i:1687 original size:29 final size:29

Alignment explanation


    Indices: 1651--1709  Score: 109
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1641 GAAGCCTGGA

                                         
       1651 GACTGTTTGTTCCCTACGTTAAACTGGTT
          1 GACTGTTTGTTCCCTACGTTAAACTGGTT

                            *            
       1680 GACTGTTTGTTCCCTATGTTAAACTGGTT
          1 GACTGTTTGTTCCCTACGTTAAACTGGTT

             
       1709 G
          1 G

       1710 CTGCTCAATC


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42


Consensus pattern (29 bp):   
GACTGTTTGTTCCCTACGTTAAACTGGTT
Done.