Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00052.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4198
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31


Found at i:1587 original size:61 final size:61

Alignment explanation


    Indices: 1516--1638  Score: 219
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       1506 GTTTGAACCC

                              **                            *            
       1516 TTATAACTTATAGGGGAGTTTGGTACCACTTAATTTAGCTTAGATCAACTTGATCAAGTGT
          1 TTATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGT

                                                                         
       1577 TTATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGT
          1 TTATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGT

             
       1638 T
          1 T

       1639 CATTGTTACC


Statistics
Matches: 59,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  61   59  1.00

ACGTcount: A:0.31, C:0.13, G:0.20, T:0.37


Consensus pattern (61 bp):   
TTATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGT
Done.