Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02433.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4332
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:3757 original size:31 final size:31

Alignment explanation


    Indices: 3722--3782  Score: 77
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       3712 GTAGTTATTA

                  *                        
       3722 AATTATTCAAAAATTTTTATTGAAGTCATTG
          1 AATTATCCAAAAATTTTTATTGAAGTCATTG

                     ** *        *        
       3753 AATTATCCACTAGTTTTTATTTAAGTCATT
          1 AATTATCCAAAAATTTTTATTGAAGTCATT

       3783 AGATTGTTGA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48


Consensus pattern (31 bp):   
AATTATCCAAAAATTTTTATTGAAGTCATTG
Done.