Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02435.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34


Found at i:915 original size:24 final size:24

Alignment explanation


    Indices: 883--931  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        873 GTGAACAAAA

                *                   
        883 TTAGTAGGAGATAGTTGTTGTATT
          1 TTAGGAGGAGATAGTTGTTGTATT

                                    
        907 TTAGGAGGAGATAGTTGTTGTATT
          1 TTAGGAGGAGATAGTTGTTGTATT

             
        931 T
          1 T

        932 CGTCAGCCTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45


Consensus pattern (24 bp):   
TTAGGAGGAGATAGTTGTTGTATT
Done.