Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02436.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 502

Length: 838
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26


Found at i:26 original size:14 final size:14

Alignment explanation


    Indices: 7--50  Score: 52
    Period size: 14  Copynumber: 3.1  Consensus size: 14

          1 GAAAAT

                         *
          7 AAAAAAGAAGAAGC
          1 AAAAAAGAAGAAGA

                     *    
         21 AAAAAAGAAAAAGA
          1 AAAAAAGAAGAAGA

                   *       
         35 AAAGAAACAAGAAGA
          1 AAA-AAAGAAGAAGA

             
         50 A
          1 A

         51 GAGTGAAGAG


Statistics
Matches: 25,  Mismatches: 4, Indels: 1
        0.83            0.13        0.03

Matches are distributed among these distances:
  14   15  0.60
  15   10  0.40

ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00


Consensus pattern (14 bp):   
AAAAAAGAAGAAGA
Done.