Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02447.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:798 original size:27 final size:27

Alignment explanation


    Indices: 760--814  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        750 TTGCTACTGA

                                       
        760 CAAATTTTCCCTTCTCCTTTAATTTAT
          1 CAAATTTTCCCTTCTCCTTTAATTTAT

                                       
        787 CAAATTTTCCCTTCTCCTTTAATTTAT
          1 CAAATTTTCCCTTCTCCTTTAATTTAT

             
        814 C
          1 C

        815 CCCTTTAAAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51


Consensus pattern (27 bp):   
CAAATTTTCCCTTCTCCTTTAATTTAT
Done.