Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00054.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:1389 original size:4 final size:4

Alignment explanation


    Indices: 1380--1430  Score: 102
    Period size: 4  Copynumber: 12.8  Consensus size: 4

       1370 TGGGCGTCGT

                                                                       
       1380 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
          1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA

               
       1428 TGT
          1 TGT

       1431 CTGTGCAAGT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   47  1.00

ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51


Consensus pattern (4 bp):   
TGTA

Found at i:1469 original size:20 final size:20

Alignment explanation


    Indices: 1427--1471  Score: 56
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1417 GTATGTATGT

                *            *  
       1427 ATGTCTGTGCAAGTGTGTAC
          1 ATGTGTGTGCAAGTGTGCAC

                                 
       1447 ATGTGTGTG-AAGTGTGCATC
          1 ATGTGTGTGCAAGTGTGCA-C

                 
       1467 ATGTG
          1 ATGTG

       1472 GCTAGTTCAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  19    8  0.36
  20   14  0.64

ACGTcount: A:0.20, C:0.11, G:0.33, T:0.36


Consensus pattern (20 bp):   
ATGTGTGTGCAAGTGTGCAC
Done.