Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02481.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2546
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:815 original size:59 final size:59

Alignment explanation


    Indices: 723--840  Score: 227
    Period size: 59  Copynumber: 2.0  Consensus size: 59

        713 ATTTCAACTG

                                                                       
        723 CACTCATTCTAATGGCAAAGATCATGGTAATATTAATTACTTTTGCTAAAGGCACTCGT
          1 CACTCATTCTAATGGCAAAGATCATGGTAATATTAATTACTTTTGCTAAAGGCACTCGT

                                                   *                   
        782 CACTCATTCTAATGGCAAAGATCATGGTAATATTAATTAGTTTTGCTAAAGGCACTCGT
          1 CACTCATTCTAATGGCAAAGATCATGGTAATATTAATTACTTTTGCTAAAGGCACTCGT

        841 TTTGGTTACC


Statistics
Matches: 58,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  59   58  1.00

ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Consensus pattern (59 bp):   
CACTCATTCTAATGGCAAAGATCATGGTAATATTAATTACTTTTGCTAAAGGCACTCGT

Found at i:1052 original size:14 final size:14

Alignment explanation


    Indices: 1033--1065  Score: 66
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1023 TAGTAAGTGA

                          
       1033 CCTATATTTTCTGT
          1 CCTATATTTTCTGT

                          
       1047 CCTATATTTTCTGT
          1 CCTATATTTTCTGT

                 
       1061 CCTAT
          1 CCTAT

       1066 TATAGTAATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.15, C:0.24, G:0.06, T:0.55


Consensus pattern (14 bp):   
CCTATATTTTCTGT
Done.