Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02499.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1155
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27


Found at i:606 original size:75 final size:75

Alignment explanation


    Indices: 513--687  Score: 296
    Period size: 75  Copynumber: 2.3  Consensus size: 75

        503 ACTACAATGT

                                        *       *        *                   
        513 CAACTATTACAATGGTAACAATGAGGCCTTGTTCACTGAGAAAGGGTGGAGTACCAAGGAAAACC
          1 CAACTATTACAATGGTAACAATGAGGCCATGTTCACCGAGAAAGGATGGAGTACCAAGGAAAACC

                * *   
        578 AGAATAGCAA
         66 AGAACAACAA

                                                                  *          
        588 CAACTATTACAATGGTAACAATGAGGCCATGTTCACCGAGAAAGGATGGAGTACTAAGGAAAACC
          1 CAACTATTACAATGGTAACAATGAGGCCATGTTCACCGAGAAAGGATGGAGTACCAAGGAAAACC

                      
        653 AGAACAACAA
         66 AGAACAACAA

                                     
        663 CAACTATTACAATGGTAACAATGAG
          1 CAACTATTACAATGGTAACAATGAG

        688 TACAACAATG


Statistics
Matches: 94,  Mismatches: 6, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  75   94  1.00

ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18


Consensus pattern (75 bp):   
CAACTATTACAATGGTAACAATGAGGCCATGTTCACCGAGAAAGGATGGAGTACCAAGGAAAACC
AGAACAACAA

Done.