Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02525.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31


Found at i:1921 original size:20 final size:20

Alignment explanation


    Indices: 1885--1922  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1875 TAAAAACTAG

                        *       
       1885 TTTTTTTTGTTTTGTTTTTC
          1 TTTTTTTTGTTTGGTTTTTC

                               
       1905 TTTTTTTT-TTCTGGTTTT
          1 TTTTTTTTGTT-TGGTTTT

       1923 AATTTGCTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    2  0.12
  20   14  0.88

ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84


Consensus pattern (20 bp):   
TTTTTTTTGTTTGGTTTTTC
Done.