Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02526.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2053
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Found at i:478 original size:135 final size:135
Alignment explanation
Indices: 317--746 Score: 700
Period size: 135 Copynumber: 3.2 Consensus size: 135
307 TACAGCCCCT
* * * * * * *
317 AAGCAAATATGGCGACTGGTTTCAGCTTCTAGTAATGCAACCAATAGCGAGCTGAAAAAGGATGA
1 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
* *
382 ACCTTTGGAATCATCCAGTAGTGATAGTTCTCAGAATTCTTGTCAAACAAATGGGGATTCAAGAA
66 ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
447 CTGTA
131 CTGTA
* * * *
452 AAGCAAAATTGGCA-ACCGATTTCAGCTTCTAGTAATACGAGTAATAGCAAGCTGAAAAAGGATA
1 AAGCAAAAATGG-AGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATA
*
516 AACCTTTGGAATCATCTAGTAGTGATAATTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGA
65 AACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGA
581 ACTGTA
130 ACTGTA
587 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
1 AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
* *
652 ACCTTTGGAATCATCTAGTAGTGATAGTTGTCAGAATTATTGTCAAGCAAATGGGGATTCAAGAA
66 ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
717 CTGTA
131 CTGTA
722 AAGCAAAAATGGAGACCGGTTTCAG
1 AAGCAAAAATGGAGACCGGTTTCAG
747 GAGGCATTGT
Statistics
Matches: 272, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
134 1 0.00
135 271 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.26
Consensus pattern (135 bp):
AAGCAAAAATGGAGACCGGTTTCAGCTTCTAGTAATACGACTAATAGCGAGCTGAAAAAGGATAA
ACCTTTGGAATCATCTAGTAGTGATAGTTCTCAGAATTCTTGTCAAGCAAATGGGGATTCAAGAA
CTGTA
Done.