Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02536.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4910
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:4407 original size:21 final size:21

Alignment explanation


    Indices: 4381--4422  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4371 CATTTTTTAT

                                 
       4381 TTTAGTTGGACCAGTAAAAAC
          1 TTTAGTTGGACCAGTAAAAAC

                                 
       4402 TTTAGTTGGACCAGTAAAAAC
          1 TTTAGTTGGACCAGTAAAAAC

       4423 CTTGCAATGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29


Consensus pattern (21 bp):   
TTTAGTTGGACCAGTAAAAAC
Done.