Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02555.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3735
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:699 original size:3 final size:3

Alignment explanation


    Indices: 691--732  Score: 84
    Period size: 3  Copynumber: 14.0  Consensus size: 3

        681 GTAGTGATTT

                                                                   
        691 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

        733 AAAGGGTGAC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33


Consensus pattern (3 bp):   
TGA

Found at i:860 original size:18 final size:18

Alignment explanation


    Indices: 821--862  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        811 TTCATGCTCT

                             *
        821 GGTTCTGGTTCGGCTTCC
          1 GGTTCTGGTTCGGCTTCA

                       * *    
        839 GGTTCTGGTTCTGTTTCA
          1 GGTTCTGGTTCGGCTTCA

                  
        857 GGTTCT
          1 GGTTCT

        863 TGTATTAATG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.02, C:0.21, G:0.31, T:0.45


Consensus pattern (18 bp):   
GGTTCTGGTTCGGCTTCA
Done.