Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02573.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30


Found at i:1052 original size:48 final size:48

Alignment explanation


    Indices: 934--1054  Score: 190
    Period size: 48  Copynumber: 2.5  Consensus size: 48

        924 AGCCGTAACA

                  *  *          *                           
        934 GCTGAACCCGTAAAGCAGGAGGTTACTAATACTCCATCAGTCTCGAAG
          1 GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG

                   *                                        
        982 GCTGAATTCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG
          1 GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG

                                      
       1030 GCTGAATCCATAAAGC-GAGATGTTA
          1 GCTGAATCCATAAAGCAG-GATGTTA

       1055 ATACTACTGC


Statistics
Matches: 67,  Mismatches: 5, Indels: 2
        0.91            0.07        0.03

Matches are distributed among these distances:
  47    1  0.01
  48   66  0.99

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24


Consensus pattern (48 bp):   
GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG
Done.