Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02622.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2781
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27


Found at i:2717 original size:55 final size:55

Alignment explanation


    Indices: 2636--2748  Score: 226
    Period size: 55  Copynumber: 2.1  Consensus size: 55

       2626 GTTTGTATCA

                                                                   
       2636 TCATTTCTAGAGGTTCTGCTTTAACCTCCCTACTGCTAATCTGTATTCCTAGATT
          1 TCATTTCTAGAGGTTCTGCTTTAACCTCCCTACTGCTAATCTGTATTCCTAGATT

                                                                   
       2691 TCATTTCTAGAGGTTCTGCTTTAACCTCCCTACTGCTAATCTGTATTCCTAGATT
          1 TCATTTCTAGAGGTTCTGCTTTAACCTCCCTACTGCTAATCTGTATTCCTAGATT

               
       2746 TCA
          1 TCA

       2749 AATGTGTTTC


Statistics
Matches: 58,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   58  1.00

ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42


Consensus pattern (55 bp):   
TCATTTCTAGAGGTTCTGCTTTAACCTCCCTACTGCTAATCTGTATTCCTAGATT
Done.