Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02627.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2527
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:1984 original size:17 final size:17

Alignment explanation


    Indices: 1962--1998  Score: 74
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       1952 CGGAAAAGAT

                             
       1962 GTATTGATCCGAGTATC
          1 GTATTGATCCGAGTATC

                             
       1979 GTATTGATCCGAGTATC
          1 GTATTGATCCGAGTATC

               
       1996 GTA
          1 GTA

       1999 GGAGACACTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35


Consensus pattern (17 bp):   
GTATTGATCCGAGTATC
Done.