Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02640.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3736
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Found at i:3438 original size:342 final size:342
Alignment explanation
Indices: 2787--3471 Score: 1095
Period size: 342 Copynumber: 2.0 Consensus size: 342
2777 ATCTGTTACG
*
2787 GAGTTGGAGTTGAAAAATACCAGCTCAAAGCCATTCCAAGAGACAATGAAGTTGAAGCTGACAAA
1 GAGTTGGAGTTGAAAAATACCAGCTCAAAGCCATTCCAAGAGACAATGAAGTTGAAGATGACAAA
* * * *
2852 AATAGAAGCACCATCATCAATTCTAGATCCTCGCTCCAGACTGGAATATCTGTACATTGATGAGG
66 AATAGAACCACCATCATCAATTCTAGATCCTCGCTCCAAACTGGAATATCTGGAAATTGATGAGG
*
2917 TCAAAGATCTTGGTTCTATGTCATCATTGCATCAGTTGTATTCCCTAAAAGTTATTAGGCTTTCA
131 TCAAAGATCTTGATTCTATGTCATCATTGCATCAGTTGTATTCCCTAAAAGTTATTAGGCTTTCA
*
2982 AGATTAGAAGCTTTGGAGAATGTTTCGAAGATTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATC
196 AGATTAGAAGCTTTGGAGAATGTTTCGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATC
* * *
3047 AACAACAATATTTTTTCCATCCTTGGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGAT
261 AACAACAATATTTCTTCCATCATTAGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGAT
3112 AGTGGAAGGGTGATGTT
326 AGTGGAAGGGTGATGTT
*
3129 GAGTTGGAGTTGAAGAATACCAGCTCAAAGCCATTCCAAGAGACAATGAAGTTGAAGATGACAAA
1 GAGTTGGAGTTGAAAAATACCAGCTCAAAGCCATTCCAAGAGACAATGAAGTTGAAGATGACAAA
* * * *
3194 AATAGAACCATCATCATCAATTCTATATCCTCTCTCCAAACTGGAATCTCTGGAAATTGATGAGG
66 AATAGAACCACCATCATCAATTCTAGATCCTCGCTCCAAACTGGAATATCTGGAAATTGATGAGG
* * * **
3259 TCAAAGATCTTGATTCTCTGTCATCATTGCATTAGTTGTATTCCCTCAAAGTTATTTTGCTTTCA
131 TCAAAGATCTTGATTCTATGTCATCATTGCATCAGTTGTATTCCCTAAAAGTTATTAGGCTTTCA
* *
3324 AGATTAGAAGCTTTGGAGAATGTTTCGGAGACTGAAATGCAAGAGGGGTTGGTTTCAGGGAAATC
196 AGATTAGAAGCTTTGGAGAATGTTTCGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATC
* * * *
3389 AACAATAATGTTTCTTCCATCATTAGAA-ACACTATATATA-ATAGATTGCCCAAATCTTAAAGG
261 AACAACAATATTTCTTCCATCATTAGAAGA-ACTACAGATAGAT-GATTGCCCAAATCTTAAAGG
*
3452 ATGGTGGAAGGGTGATGTT
324 ATAGTGGAAGGGTGATGTT
3471 G
1 G
3472 GTGAAGCTTC
Statistics
Matches: 314, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
341 3 0.01
342 311 0.99
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (342 bp):
GAGTTGGAGTTGAAAAATACCAGCTCAAAGCCATTCCAAGAGACAATGAAGTTGAAGATGACAAA
AATAGAACCACCATCATCAATTCTAGATCCTCGCTCCAAACTGGAATATCTGGAAATTGATGAGG
TCAAAGATCTTGATTCTATGTCATCATTGCATCAGTTGTATTCCCTAAAAGTTATTAGGCTTTCA
AGATTAGAAGCTTTGGAGAATGTTTCGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATC
AACAACAATATTTCTTCCATCATTAGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGAT
AGTGGAAGGGTGATGTT
Done.