Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02640.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3841
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Found at i:3344 original size:447 final size:446
Alignment explanation
Indices: 2494--3740 Score: 2016
Period size: 447 Copynumber: 2.8 Consensus size: 446
2484 CATCTGCCAC
2494 CATTGCATCAGTTGTATTCCCTCAAAGTTATTCAGCTTTCAAGATTAGAAGCTTTGGAGAATGTT
1 CATTGCATCAGTTGTATTCCCTCAAAGTTATT-AGCTTTCAAGATTAGAAGCTTTGGAGAATGTT
* *
2559 TC-AGAGACTGAAATGCAAGAAGAGTTGGTTTCGGGGAAATCAACAACAATATTTTTTCCATCCT
65 TCGA-AGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATCAACAACAATATTTTTTCCATCCT
*
2623 TGGAAGAACTACAGATAGATGATTGCCCAAATTTTAAAGGATGGTGGAAGGGTGATGTTGGTGAA
129 TGGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGATGGTGGAAGGGTGATGTTGGTGAA
*
2688 GCTTCAAATCCACACTTGCCGTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGCCCTAA
194 GCTTCAAATCCACACTTGCAGTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGCCCTAA
* *
2753 TCTAACCACTATGCCATTGTTTCCATCTGTTACGGAGTTGGAGTTGAAAAATACCAGCTCAAAGC
259 TCTAACCACTATGCCATTGTTTCCATCTGTTACAGAGTTGGAGTTGAAGAATACCAGCTCAAAGC
* *
2818 CATTCCAAGAGACAATGAAGTTGAAGCTGACAAAAATAGAAGCACCATCATCAATTCTAGATCCT
324 CATTCCAAGAGACAATGAAGTTGAAGATGACAAAAATAGAACCACCATCATCAATTCTAGATCCT
* * * *
2883 CGCTCCAGACTGGAATATCTGTACATTGATGAGGTCAAAGATCTTGGTTCTATGTCAT
389 CGCTCCAAACTGGAATATCTGGAAATTGATGAGGTCAAAGATCTTGATTCTATGTCAT
*
2941 CATTGCATCAGTTGTATTCCCTAAAAGTTATTAGGCTTTCAAGATTAGAAGCTTTGGAGAATGTT
1 CATTGCATCAGTTGTATTCCCTCAAAGTTATTA-GCTTTCAAGATTAGAAGCTTTGGAGAATGTT
*
3006 TCGAAGATTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATCAACAACAATATTTTTTCCATCCTT
65 TCGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATCAACAACAATATTTTTTCCATCCTT
*
3071 GGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGATAGTGGAAGGGTGATGTTGGTGAAG
130 GGAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGATGGTGGAAGGGTGATGTTGGTGAAG
** * *
3136 CTTCAAATCCACACTTGCTTTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGTCATAAT
195 CTTCAAATCCACACTTGCAGTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGCCCTAAT
3201 CTAACCACTATGCCATTGTTTCCATCTGTTACAGAGTTGGAGTTGAAGAATACCAGCTCAAAGCC
260 CTAACCACTATGCCATTGTTTCCATCTGTTACAGAGTTGGAGTTGAAGAATACCAGCTCAAAGCC
* *
3266 ATTCCAAGAGACAATGAAGTTGAAGATGACAAAAATAGAACCATCATCATCAATTCTATATCCTC
325 ATTCCAAGAGACAATGAAGTTGAAGATGACAAAAATAGAACCACCATCATCAATTCTAGATCCTC
* * *
3331 TCTCCAAACTGGAATCTCTGGAAATTGATGAGGTCAAAGATCTTGATTCTCTGTCAT
390 GCTCCAAACTGGAATATCTGGAAATTGATGAGGTCAAAGATCTTGATTCTATGTCAT
* *
3388 CATTGCATTAGTTGTATTCCCTCAAAGTTATTTTGCTTTCAAGATTAGAAGCTTTGGAGAATGTT
1 CATTGCATCAGTTGTATTCCCTCAAAGTTA-TTAGCTTTCAAGATTAGAAGCTTTGGAGAATGTT
* * * * * *
3453 TCGGAGACTGAAATGCAAGAGGGGTTGGTTTCAGGGAAATCAACAATAATGTTTCTTCCATCATT
65 TCGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATCAACAACAATATTTTTTCCATCCTT
* * *
3518 AGAA-ACACTATATATA-ATAGATTGCCCAAATCTTAAAGGATGGTGGAAGGGTGATGTTGGTGA
130 GGAAGA-ACTACAGATAGAT-GATTGCCCAAATCTTAAAGGATGGTGGAAGGGTGATGTTGGTGA
* * * *
3581 AGCTTCAAATCCACACTTGCAGTGCTTTTCTTGCCTTTCACATTTAGCTATCGAGCATTGCCCTA
193 AGCTTCAAATCCACACTTGCAGTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGCCCTA
* * *
3646 ATCTAACCACTATGCCATTGCTTCCATCTGTTA-AAACGTTGAAGTTGAAGAATACCAGCTCAAA
258 ATCTAACCACTATGCCATTGTTTCCATCTGTTACAGA-GTTGGAGTTGAAGAATACCAGCTCAAA
*
3710 GCCATTTCAAGAGACAATGAAGTTGAAGATG
322 GCCATTCCAAGAGACAATGAAGTTGAAGATG
3741 TTGCGCGGAA
Statistics
Matches: 745, Mismatches: 49, Indels: 12
0.92 0.06 0.01
Matches are distributed among these distances:
446 6 0.01
447 736 0.99
448 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (446 bp):
CATTGCATCAGTTGTATTCCCTCAAAGTTATTAGCTTTCAAGATTAGAAGCTTTGGAGAATGTTT
CGAAGACTGAAATGCAAGAGGAGTTGGTTTCAGGGAAATCAACAACAATATTTTTTCCATCCTTG
GAAGAACTACAGATAGATGATTGCCCAAATCTTAAAGGATGGTGGAAGGGTGATGTTGGTGAAGC
TTCAAATCCACACTTGCAGTGCTTTCCTTGCCTTTCACATTTAACTATCAATCATTGCCCTAATC
TAACCACTATGCCATTGTTTCCATCTGTTACAGAGTTGGAGTTGAAGAATACCAGCTCAAAGCCA
TTCCAAGAGACAATGAAGTTGAAGATGACAAAAATAGAACCACCATCATCAATTCTAGATCCTCG
CTCCAAACTGGAATATCTGGAAATTGATGAGGTCAAAGATCTTGATTCTATGTCAT
Done.