Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02641.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5076
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:4270 original size:17 final size:17

Alignment explanation


    Indices: 4248--4283  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       4238 ACATTATTTA

                    *        
       4248 AAATTTGTTAAAATTAT
          1 AAATTTGTAAAAATTAT

                             
       4265 AAATTTGTAAAAATTAT
          1 AAATTTGTAAAAATTAT

              
       4282 AA
          1 AA

       4284 CCAATTAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42


Consensus pattern (17 bp):   
AAATTTGTAAAAATTAT
Done.