Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02647.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 540

Length: 901
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26


Found at i:472 original size:228 final size:228

Alignment explanation


    Indices: 93--607  Score: 690
    Period size: 228  Copynumber: 2.3  Consensus size: 228

         83 TAAGACTCTA

                                                                    *        
         93 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAAAT
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAAGCCAAAAT

                  *              *           *     *                 *  *    
        158 CCAAGATAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTTGAGG
         66 CCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAGG

                         *                       *                           
        223 ACGGCCGGACCTTGGCCGATTACAACATCCAAAAGGAGTCAACTCTCCACCTCGTCCTCCGT-TT
        131 ACGGCCGGACCTTAGCCGATTACAACATCCAAAAGGAATCAACTCTCCACCTCGTCCTCCGTCTT

               *                    *         
        287 GCGCGGTGGGATGCAAATCTTCGTGAAAACCTTG
        196 -CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                       *                       *                             
        321 ACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCTGACACGATCGACAACGTGAAAGCCAAAAT
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAAGCCAAAAT

                                                                  *          
        386 CCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAACTCGAGG
         66 CCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAGG

                *     *              *     *        *     *  *  *     *      
        451 ACGGGCGGACTTTAGCCGATTACAATATCCAGAAGGAATCGACTCTTCATCTGGTCCTGCGTCTT
        131 ACGGCCGGACCTTAGCCGATTACAACATCCAAAAGGAATCAACTCTCCACCTCGTCCTCCGTCTT

                          *           *  *   
        516 CGAGGTGGGATGCAGATCTTCGTCAAGACTTTG
        196 CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                 *        *   * *  *  *        *  *     *  *           
        549 ACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCGGATACGATTGATAACGTGAAAGC
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAAGC

        608 GAAGATTCAG


Statistics
Matches: 249,  Mismatches: 37, Indels: 2
        0.86            0.13        0.01

Matches are distributed among these distances:
 228  247  0.99
 229    2  0.01

ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19


Consensus pattern (228 bp):   
ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAAGCCAAAAT
CCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAGG
ACGGCCGGACCTTAGCCGATTACAACATCCAAAAGGAATCAACTCTCCACCTCGTCCTCCGTCTT
CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

Found at i:702 original size:228 final size:228

Alignment explanation


    Indices: 93--752  Score: 660
    Period size: 228  Copynumber: 2.9  Consensus size: 228

         83 TAAGACTCTA

                       *        *  *           *                    *        
         93 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAAAT
          1 ACCGGCAAGACAATCACTCTAGAAGTCGAGAGCTCGGACACGATCGACAACGTGAAAGCCAAAAT

                  *  *     *     *           *     *              *  *  *  * 
        158 CCAAGATAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTTGAGG
         66 CCAAGACAAAGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAACTCGAAG

                **    *              *                    *                  
        223 ACGGCCGGACCTTGGCCGATTACAACATCCAAAAGGAGTCAACTCTCCACCTCGTCCTCCGT-TT
        131 ACGGAAGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT

               *                    *         
        287 GCGCGGTGGGATGCAAATCTTCGTGAAAACCTTG
        196 -CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                                *  *           *                             
        321 ACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCTGACACGATCGACAACGTGAAAGCCAAAAT
          1 ACCGGCAAGACAATCACTCTAGAAGTCGAGAGCTCGGACACGATCGACAACGTGAAAGCCAAAAT

                     *     *     *                                         * 
        386 CCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAACTCGAGG
         66 CCAAGACAAAGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAACTCGAAG

                **       *                 *     *  *        *  *     *      
        451 ACGGGCGGACTTTAGCCGATTACAATATCCAGAAGGAATCGACTCTTCATCTGGTCCTGCGTCTT
        131 ACGGAAGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT

                          *           *  *   
        516 CGAGGTGGGATGCAGATCTTCGTCAAGACTTTG
        196 CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                 *     *  *   *       *           *     *  *           *  *  
        549 ACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCGGATACGATTGATAACGTGAAAGCGAAGAT
          1 ACCGGCAAGACAATCACTCTAGAAGTCGAGAGCTCGGACACGATCGACAACGTGAAAGCCAAAAT

            *  *              *        *       *    *  *  *   *           *  
        614 TCAGGACAAAGAAGGAATTCCACCAGATCAGCAAAGGT-TGATTTTTGCTGGGAAA-CAACTGGA
         66 CCAAGACAAAGAAGGAATCCCACCAGACCAGC-AACGTCTCATCTTCGC-CGGAAAGCAACTCGA

                              *           *           *           *  *  *    
        677 AGACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTC
        129 AGACGGAAGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTC

                *      
        742 TTCGTGGTGGG
        194 TTCGAGGTGGG

        753 TTCTAAGCCT


Statistics
Matches: 363,  Mismatches: 66, Indels: 6
        0.83            0.15        0.01

Matches are distributed among these distances:
 228  352  0.97
 229   11  0.03

ACGTcount: A:0.29, C:0.25, G:0.25, T:0.20


Consensus pattern (228 bp):   
ACCGGCAAGACAATCACTCTAGAAGTCGAGAGCTCGGACACGATCGACAACGTGAAAGCCAAAAT
CCAAGACAAAGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAACTCGAAG
ACGGAAGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT
CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG
Done.