Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02647.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 540

Length: 901
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26


Found at i:483 original size:228 final size:226

Alignment explanation


    Indices: 68--748  Score: 763
    Period size: 228  Copynumber: 3.0  Consensus size: 226

         58 AGCCAAAAAA

                                    *     *                                  
         68 GATGCAGATCTTCGTTAAGACTCTAACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACA
          1 GATGCAGATCTTCGTTAAGAC-CTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCCGACA

                         *  *                             *                  
        133 CGATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAACGTCTC
         65 CGATCGACAACGTGAAAGCGAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTC

                                         *  *  *        *     *              
        198 ATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACCTTGGCCGACTACAACATCCAGAAGGAGTC
        130 ATCTTCGCCGG-AAACAACTCGAAGACGGACGGACTTTGGCCGATTACAATATCCAGAAGGAGTC

               *  *                           
        263 AACGCTCCACCTTGTCCTTCGT-TTGCGTGGCGG
        194 AACTCTTCACCTTGTCCTTCGTCTT-CGTGGCGG

                  *                                                     *    
        296 GATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCTGACA
          1 GATGCAGATCTTCGTTAAGAC-CTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCCGACA

                               *  *                       *                  
        361 CGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGTCTC
         65 CGATCGACAACGTGAAAGCGAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTC

                                   *     *        *                       *  
        426 ATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAATATCCAGAAGGAATC
        130 ATCTTCGCCGGAAA-CAACTCGAAGACGGACGGACTTTGGCCGATTACAATATCCAGAAGGAGTC

            *        *  *     *        *  *  
        491 GACTCTTCATCTGGTCCTGCGTCTTCGAGGTGG
        194 AACTCTTCACCTTGTCCTTCGTCTTCGTGGCGG

                           *     *        *        *   * *  *  *        *  * 
        524 GATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCGGATA
          1 GATGCAGATCTTCGTTAAGACCTT-ACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCCGACA

                *  *                 *  *     *     *  *        *       *    
        589 CGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAGCAAAGGT-T
         65 CGATCGACAACGTGAAAGCGAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGC-AACGTCT

            *  *  *   *          *         *          *           *  *       
        653 GATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGT
        129 CATCTTCGC-CGGAAACAACTCGAAGACGGACGGACTTTGGCCGATTACAATATCCAGAAGGAGT

             *              *              
        718 CCACTCTTCACCTTGTTCTTCGTCTTCGTGG
        193 CAACTCTTCACCTTGTCCTTCGTCTTCGTGG

        749 TGGGTTCTAA


Statistics
Matches: 380,  Mismatches: 68, Indels: 10
        0.83            0.15        0.02

Matches are distributed among these distances:
 227    5  0.01
 228  364  0.96
 229   11  0.03

ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21


Consensus pattern (226 bp):   
GATGCAGATCTTCGTTAAGACCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCCGACAC
GATCGACAACGTGAAAGCGAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTCA
TCTTCGCCGGAAACAACTCGAAGACGGACGGACTTTGGCCGATTACAATATCCAGAAGGAGTCAA
CTCTTCACCTTGTCCTTCGTCTTCGTGGCGG
Done.