Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02647.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 540

Length: 901
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26


Found at i:472 original size:228 final size:228

Alignment explanation


    Indices: 93--752  Score: 748
    Period size: 228  Copynumber: 2.9  Consensus size: 228

         83 TAAGACTCTA

                                                                       *  *  
         93 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAAAT
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGAT

                  *              *           *                       *  *  * 
        158 CCAAGATAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTTGAGG
         66 CCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTGATCTTCGCCGGAAAACAACTCGAAG

                      *              *                    *                  
        223 ACGGCCGGACCTTGGCCGATTACAACATCCAAAAGGAGTCAACTCTCCACCTCGTCCTCCGT-TT
        131 ACGGCCGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT

               *                    *         
        287 GCGCGGTGGGATGCAAATCTTCGTGAAAACCTTG
        196 -CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                       *                                         *           
        321 ACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTTAAGGCGAAGAT
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGAT

                                 *                 *                         
        386 CCAAGACAAGGAAGGCATCCCCCCAGACCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAG
         66 CCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTGATCTTCGCCGGAAAACAACTCGAAG

                   *     *                 *     *  *        *  *     *      
        451 ACGGCCGTACTTTAGCCGATTACAATATCCAGAAGGAATCGACTCTTCATCTGGTCCTGCGTCTT
        131 ACGGCCGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT

                          *           *  *   
        516 CGAGGTGGGATGCAGATCTTCGTCAAGACTTTG
        196 CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG

                 *        *   * *  *  *        *  *     *  *        *        
        549 ACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCGGATACGATTGATAACGTGAAAGCGAAGAT
          1 ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGAT

            *  *     *     *  *        *       *       *  *  *  *        *   
        614 TCAGGACAAAGAAGGAATTCCACCAGATCAGCAAAGGT-TGATTTTTGCTGGGAAACAACTGGAA
         66 CCAAGACAAGGAAGGCATCCCACCAGACCAGC-AACGTCTGATCTTCGCCGGAAAACAACTCGAA

                 **          *           *           *           *  *  *     
        678 GACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCT
        130 GACGGCCGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCT

               *      
        743 TCGTGGTGGG
        195 TCGAGGTGGG

        753 TTCTAAGCCT


Statistics
Matches: 362,  Mismatches: 68, Indels: 4
        0.83            0.16        0.01

Matches are distributed among these distances:
 228  356  0.98
 229    6  0.02

ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20


Consensus pattern (228 bp):   
ACCGGCAAGACGATCACTCTCGAGGTCGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGAT
CCAAGACAAGGAAGGCATCCCACCAGACCAGCAACGTCTGATCTTCGCCGGAAAACAACTCGAAG
ACGGCCGGACTTTGGCCGATTACAATATCCAAAAGGAGTCAACTCTTCACCTCGTCCTCCGTCTT
CGAGGTGGGATGCAAATCTTCGTCAAAACCTTG
Done.