Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00068.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2018
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28


Found at i:1918 original size:32 final size:32

Alignment explanation


    Indices: 1882--1950  Score: 95
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       1872 GCTTTTTACA

                              *     *        
       1882 TGTTGCGACGG-AATACGTTTTTTTTCGTGACT
          1 TGTTGCGA-GGAAATACGCTTTTTCTCGTGACT

                           *                
       1914 TGTTGCGAGGAAATATGCTTTTTCTCGTGACT
          1 TGTTGCGAGGAAATACGCTTTTTCTCGTGACT

                 
       1946 TGTTG
          1 TGTTG

       1951 TGAAATGAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  31    2  0.06
  32   31  0.94

ACGTcount: A:0.16, C:0.14, G:0.26, T:0.43


Consensus pattern (32 bp):   
TGTTGCGAGGAAATACGCTTTTTCTCGTGACT
Done.