Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02675.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3609
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29


Found at i:533 original size:48 final size:48

Alignment explanation


    Indices: 477--572  Score: 174
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        467 GGAGATGTTG

                                     *                      
        477 TTGGGTTGGAGAAGAAAGAAATAAGTTCGGAAAATGGCACTGCGAGTA
          1 TTGGGTTGGAGAAGAAAGAAATAAGCTCGGAAAATGGCACTGCGAGTA

                                   *                        
        525 TTGGGTTGGAGAAGAAAGAAATAGGCTCGGAAAATGGCACTGCGAGTA
          1 TTGGGTTGGAGAAGAAAGAAATAAGCTCGGAAAATGGCACTGCGAGTA

        573 CATTAAGAGA


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  48   46  1.00

ACGTcount: A:0.36, C:0.09, G:0.34, T:0.20


Consensus pattern (48 bp):   
TTGGGTTGGAGAAGAAAGAAATAAGCTCGGAAAATGGCACTGCGAGTA
Done.