Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02676.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 818
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:556 original size:3 final size:3

Alignment explanation


    Indices: 543--580  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        533 ATATGCTATA

                 *                                      *     
        543 ATC ACC ATC ATC ATC ATC ATC ATC ATC ATC ATC TTC AT
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT

        581 TGTTCTTTTG


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATC

Done.