Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02688.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3340
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30


Found at i:398 original size:84 final size:83

Alignment explanation


    Indices: 296--455  Score: 241
    Period size: 84  Copynumber: 1.9  Consensus size: 83

        286 TGTGCTCCAA

                                   *                      *         *        
        296 AAGTTGCATACAAAAAGGTCAAGTTA-GACCCCGGGGAAAAATAAATAAATTCCCATCCCGGATG
          1 AAGTTGCATACAAAAAGGTCAAGCTATG-CCCCGGGGAAAAATAAAGAAATTCCCAGCCCGGAT-

            *                   
        360 GTCTCTAACAATTCCAAATG
         64 ATCTCTAACAATTCCAAATG

                                                    *                        
        380 AAGTTGCATACAAAAAGGTCAAGCTATGCCCCGGGGAAAAGTAAAGAAATTCCCAGCCCGGATAT
          1 AAGTTGCATACAAAAAGGTCAAGCTATGCCCCGGGGAAAAATAAAGAAATTCCCAGCCCGGATAT

                *      
        445 CTCTGACAATT
         66 CTCTAACAATT

        456 GTCCGAGCGA


Statistics
Matches: 69,  Mismatches: 6, Indels: 3
        0.88            0.08        0.04

Matches are distributed among these distances:
  83   11  0.16
  84   57  0.83
  85    1  0.01

ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21


Consensus pattern (83 bp):   
AAGTTGCATACAAAAAGGTCAAGCTATGCCCCGGGGAAAAATAAAGAAATTCCCAGCCCGGATAT
CTCTAACAATTCCAAATG
Done.