Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02702.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2890
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:656 original size:26 final size:27

Alignment explanation


    Indices: 627--680  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 27

        617 TCTAAATAGA

                                        
        627 GATTTTA-TGATT-TTCTTCTTCTGTGT
          1 GATTTTAGTG-TTATTCTTCTTCTGTGT

                                        
        653 GATTTTAGTGTTCATTCTTCTTCTGTGT
          1 GATTTTAGTGTT-ATTCTTCTTCTGTGT

        681 TGGTTTCCAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  26    9  0.36
  27    2  0.08
  28   14  0.56

ACGTcount: A:0.11, C:0.13, G:0.17, T:0.59


Consensus pattern (27 bp):   
GATTTTAGTGTTATTCTTCTTCTGTGT
Done.