Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02721.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2883
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27


Found at i:1813 original size:243 final size:243

Alignment explanation


    Indices: 1385--1871  Score: 884
    Period size: 243  Copynumber: 2.0  Consensus size: 243

       1375 CAAGTGTTGT

                         *                                                   
       1385 TGATTTGACAGCTTCTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
          1 TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT

                                         *                                   
       1450 CTTTCATGGAAGCAGCTAAAAGTTTAAGTGCAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
         66 CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG

                                                 *                           
       1515 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACGGGCTCAAGCTGAGAGGAGGGAACCTGA
        131 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA

                                                            
       1580 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
        196 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC

                               *     *                                       
       1628 TGATTTGACAGCTACTGTTGCTGATTCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
          1 TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT

                     *                     *                                 
       1693 CTTTCATGGCAGCAGCTAAAAGTTTAAGTACTGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
         66 CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG

                                                                      *      
       1758 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGCACCTGA
        131 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA

                                           **               
       1823 CAAGGCCATCAGAGAAGACCAGGACAAGATGGGCAGGAGTGTTCCTGC
        196 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC

             
       1871 T
          1 T

       1872 TCGTCTGTTG


Statistics
Matches: 234,  Mismatches: 10, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 243  234  1.00

ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24


Consensus pattern (243 bp):   
TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA
CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
Done.