Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02731.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1866
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:1239 original size:13 final size:14

Alignment explanation


    Indices: 1215--1248  Score: 52
    Period size: 13  Copynumber: 2.5  Consensus size: 14

       1205 AAACAGCATT

                 *        
       1215 AGAAGGTTTATGGA
          1 AGAAGATTTATGGA

                          
       1229 A-AAGATTTATGGA
          1 AGAAGATTTATGGA

                   
       1242 AGAAGAT
          1 AGAAGAT

       1249 ACTCCGCTGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  13   12  0.67
  14    6  0.33

ACGTcount: A:0.44, C:0.00, G:0.29, T:0.26


Consensus pattern (14 bp):   
AGAAGATTTATGGA
Done.