Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02747.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1171
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28


Found at i:849 original size:30 final size:30

Alignment explanation


    Indices: 808--869  Score: 106
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        798 GAGAGGACCT

                *                         
        808 CCTGGTCCACCACCACCACGCCCTGGAATG
          1 CCTGCTCCACCACCACCACGCCCTGGAATG

                          *               
        838 CCTGCTCCACCACCCCCACGCCCTGGAATG
          1 CCTGCTCCACCACCACCACGCCCTGGAATG

              
        868 CC
          1 CC

        870 GCCTCCCCCT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.18, C:0.52, G:0.18, T:0.13


Consensus pattern (30 bp):   
CCTGCTCCACCACCACCACGCCCTGGAATG
Done.