Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02753.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4699
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:365 original size:23 final size:22

Alignment explanation


    Indices: 317--365  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        307 TCTTTCAATT

                *             * **
        317 GTTTTTTTTTTTTGGTGATATT
          1 GTTTGTTTTTTTTGGTGAGAAA

                                   
        339 GTTTGTTTTTTTTGGTTGAGAAA
          1 GTTTGTTTTTTTTGG-TGAGAAA

                
        362 GTTT
          1 GTTT

        366 TGATATTTGG


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  22   14  0.64
  23    8  0.36

ACGTcount: A:0.12, C:0.00, G:0.22, T:0.65


Consensus pattern (22 bp):   
GTTTGTTTTTTTTGGTGAGAAA
Done.