Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00075.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1501
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30


Found at i:252 original size:49 final size:49

Alignment explanation


    Indices: 132--275  Score: 164
    Period size: 50  Copynumber: 2.9  Consensus size: 49

        122 TTAAGATCGT

                                        *    *        *     * 
        132 GGAGATCAATTGAGCACGATTTGGAAATCATCACTTTTGGAGTTTGCATC
          1 GGAGATCAATTGAGCACGATTTGGAAATAATCATTTTTGGA-ATTGCAGC

              *             *                                
        182 GGTGATCAATTGAGCAAGATTTGGAAATAATCATTTTTGGAATTGCAGC
          1 GGAGATCAATTGAGCACGATTTGGAAATAATCATTTTTGGAATTGCAGC

                      *   *        *                *     
        231 GGAGATCAATCGAGGACGATTT-CAACATAATCATGTTTTAGAATT
          1 GGAGATCAATTGAGCACGATTTGGAA-ATAATCAT-TTTTGGAATT

        276 TCAATTCATG


Statistics
Matches: 80,  Mismatches: 12, Indels: 4
        0.83            0.12        0.04

Matches are distributed among these distances:
  48    2  0.03
  49   32  0.40
  50   46  0.57

ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32


Consensus pattern (49 bp):   
GGAGATCAATTGAGCACGATTTGGAAATAATCATTTTTGGAATTGCAGC
Done.