Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02775.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2367
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Found at i:2127 original size:174 final size:174
Alignment explanation
Indices: 1837--2162 Score: 438
Period size: 174 Copynumber: 1.9 Consensus size: 174
1827 CTGGGCCATA
* * * * * ** *
1837 TCAGGCAGATTTCTGGAGCAAATTTGGTTATTCATGACCCAAAGCCGGGGGCCACTGATGGTTTA
1 TCAGGCAGATATCTGGAGCAAATTTAGTTATTCAAGACCCAAAGCCAGGGACCACCAAGGGTTTA
* * ** * *
1902 GTTGTTGTCTCTGGAACATCGGATCAGTTACGTACTGCTCAAAGCCTTATTCAAGCTTTTATCCT
66 GTTGTTGTCTCGGGAACATCGGATCAGTTACGGACAACTCAAACCCTTATTCAAGCTTATATCCT
*
1967 ATGCGGACAAACTGCAGCTTGAGTATCTGTTAAATATTTGTCCT
131 ATGCGGACAAACTGCAACTTGAGTATCTGTTAAATATTTGTCCT
* * *
2011 TCAGGCAGATATCTGGAGCAAATTTAGTTATTCAAGACCCGAAGCCAGTGACTACCAAGGGTTTA
1 TCAGGCAGATATCTGGAGCAAATTTAGTTATTCAAGACCCAAAGCCAGGGACCACCAAGGGTTTA
* * *
2076 GTTGTTGTGCT-GGGAACATCGTATCAGTTGCGGACAACTCAGACCCTTATTCAAGCTTATATCC
66 GTTGTTGT-CTCGGGAACATCGGATCAGTTACGGACAACTCAAACCCTTATTCAAGCTTATATCC
*
2140 TTTGCGGACAAACTGCAACTTGA
130 TATGCGGACAAACTGCAACTTGA
2163 AGATCTATTC
Statistics
Matches: 129, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
174 127 0.98
175 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (174 bp):
TCAGGCAGATATCTGGAGCAAATTTAGTTATTCAAGACCCAAAGCCAGGGACCACCAAGGGTTTA
GTTGTTGTCTCGGGAACATCGGATCAGTTACGGACAACTCAAACCCTTATTCAAGCTTATATCCT
ATGCGGACAAACTGCAACTTGAGTATCTGTTAAATATTTGTCCT
Done.