Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02782.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3644
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37


Found at i:2114 original size:4 final size:4

Alignment explanation


    Indices: 2105--2143  Score: 51
    Period size: 4  Copynumber: 9.8  Consensus size: 4

       2095 AGTGGATATA

                        *         *    *                    
       2105 TTAG TTAG TTTG TTAG TTTG TTTG TTAG TTAG TTAG TTA
          1 TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTA

       2144 ATCATTTATT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.18, C:0.00, G:0.23, T:0.59


Consensus pattern (4 bp):   
TTAG

Found at i:2122 original size:12 final size:12

Alignment explanation


    Indices: 2105--2143  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       2095 AGTGGATATA

                        
       2105 TTAGTTAGTTTG
          1 TTAGTTAGTTTG

                  *     
       2117 TTAGTTTGTTTG
          1 TTAGTTAGTTTG

                      * 
       2129 TTAGTTAGTTAG
          1 TTAGTTAGTTTG

               
       2141 TTA
          1 TTA

       2144 ATCATTTATT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.18, C:0.00, G:0.23, T:0.59


Consensus pattern (12 bp):   
TTAGTTAGTTTG
Done.