Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02792.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1951
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30


Found at i:1589 original size:3 final size:3

Alignment explanation


    Indices: 1581--1634  Score: 63
    Period size: 3  Copynumber: 18.0  Consensus size: 3

       1571 AACAATTGGG

                        *       *       *       *       *                  
       1581 TGA TGA TGA AGA TGA AGA TGA AGA TGA AGA TGA AGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

                   
       1629 TGA TGA
          1 TGA TGA

       1635 GTTCTGTTCT


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24


Consensus pattern (3 bp):   
TGA

Found at i:1632 original size:12 final size:12

Alignment explanation


    Indices: 1581--1634  Score: 81
    Period size: 12  Copynumber: 4.5  Consensus size: 12

       1571 AACAATTGGG

                        
       1581 TGATGATGAAGA
          1 TGATGATGAAGA

               *        
       1593 TGAAGATGAAGA
          1 TGATGATGAAGA

               *        
       1605 TGAAGATGAAGA
          1 TGATGATGAAGA

                     *  
       1617 TGATGATGATGA
          1 TGATGATGAAGA

                  
       1629 TGATGA
          1 TGATGA

       1635 GTTCTGTTCT


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   39  1.00

ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24


Consensus pattern (12 bp):   
TGATGATGAAGA

Found at i:1634 original size:6 final size:6

Alignment explanation


    Indices: 1585--1631  Score: 76
    Period size: 6  Copynumber: 7.8  Consensus size: 6

       1575 ATTGGGTGAT

                                                    *      *      
       1585 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAT GATGAT GATGA
          1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGA

       1632 TGAGTTCTGT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21


Consensus pattern (6 bp):   
GATGAA

Found at i:1847 original size:10 final size:10

Alignment explanation


    Indices: 1832--1857  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       1822 TATGTGCATC

                      
       1832 AAATTCTTGT
          1 AAATTCTTGT

                      
       1842 AAATTCTTGT
          1 AAATTCTTGT

                  
       1852 AAATTC
          1 AAATTC

       1858 ATGAGAAGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46


Consensus pattern (10 bp):   
AAATTCTTGT
Done.