Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02794.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3606
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:987 original size:11 final size:11

Alignment explanation


    Indices: 971--996  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        961 TTTGTCTAGT

                       
        971 GGTGTGCTGAA
          1 GGTGTGCTGAA

                       
        982 GGTGTGCTGAA
          1 GGTGTGCTGAA

                
        993 GGTG
          1 GGTG

        997 GTAGGCTATA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.15, C:0.08, G:0.50, T:0.27


Consensus pattern (11 bp):   
GGTGTGCTGAA
Done.