Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02798.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3094
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Found at i:2640 original size:49 final size:49

Alignment explanation


    Indices: 2586--2685  Score: 191
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       2576 TTTATAAAGT

                                                             
       2586 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
          1 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC

                                  *                          
       2635 TAAACTAATTTTATTGGCATCTTAATAATATCAAAATAATATTTACTAC
          1 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC

              
       2684 TA
          1 TA

       2686 TGAAAGTTTT


Statistics
Matches: 50,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  49   50  1.00

ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40


Consensus pattern (49 bp):   
TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
Done.