Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02800.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4304
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:2750 original size:18 final size:18

Alignment explanation


    Indices: 2705--2757  Score: 54
    Period size: 18  Copynumber: 3.0  Consensus size: 18

       2695 GTGCAAAATT

                       *      
       2705 TTGCAATCTTAGTTGTAA
          1 TTGCAATCTTAATTGTAA

            **   *        *   
       2723 ACGCATTCTTAATTTTAA
          1 TTGCAATCTTAATTGTAA

                              
       2741 TTGCAATCTTAA-TGTAA
          1 TTGCAATCTTAATTGTAA

       2758 ATGCTTAATT


Statistics
Matches: 26,  Mismatches: 9, Indels: 1
        0.72            0.25        0.03

Matches are distributed among these distances:
  17    4  0.15
  18   22  0.85

ACGTcount: A:0.32, C:0.13, G:0.11, T:0.43


Consensus pattern (18 bp):   
TTGCAATCTTAATTGTAA

Found at i:3643 original size:49 final size:49

Alignment explanation


    Indices: 3588--3686  Score: 189
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       3578 GAACTTGATC

                                                             
       3588 TAAGTAAGAATGCCTCGTGAATATTTAGAAATATTTACAATGTATCACT
          1 TAAGTAAGAATGCCTCGTGAATATTTAGAAATATTTACAATGTATCACT

                        *                                    
       3637 TAAGTAAGAATGTCTCGTGAATATTTAGAAATATTTACAATGTATCACT
          1 TAAGTAAGAATGCCTCGTGAATATTTAGAAATATTTACAATGTATCACT

             
       3686 T
          1 T

       3687 TCTTTTATAG


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  49   49  1.00

ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36


Consensus pattern (49 bp):   
TAAGTAAGAATGCCTCGTGAATATTTAGAAATATTTACAATGTATCACT
Done.