Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1137
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:283 original size:15 final size:15

Alignment explanation


    Indices: 259--293  Score: 54
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        249 TCTTTTCATT

                           
        259 AAAAATTAAAAA-AA
          1 AAAAATTAAAAATAA

                            
        273 AAAACATTAAAAATAA
          1 AAAA-ATTAAAAATAA

                 
        289 AAAAA
          1 AAAAA

        294 GAAGAAGAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  14    4  0.21
  15    9  0.47
  16    6  0.32

ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14


Consensus pattern (15 bp):   
AAAAATTAAAAATAA
Done.