Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02805.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6375
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38


Found at i:3146 original size:118 final size:113

Alignment explanation


    Indices: 2928--3150  Score: 320
    Period size: 118  Copynumber: 1.9  Consensus size: 113

       2918 GCACATTCCA

                           *       *                                         
       2928 TATAAATGTTGCTTCTTACATCTGTAAGTGAAATGCGTGTATATATATTCTCTTTATATATTTGC
          1 TATAAATGTTGCTTCATACATCTCTAAGTGAAATGCGTGTATATATATTCTCTTTATATATTTGC

                                  *  *                       
       2993 ATGCATCCATAAGTGAAATTTGGATGTATATATATTTCTTTCTATCTGT
         66 ATGCATCCATAAGTGAAATTTGCATCTATATATA-TTCTTTCTATCTGT

                   *         *                   *                           
       3042 TATAAATTTTGCTTCATGCATCTCTAAGTGAAATGTGTGTGTATATATATTCTCTTTTGATATAT
          1 TATAAATGTTGCTTCATACATCTCTAAGTGAAA--TGCGTGTATATATATTCTC-TTT-ATATAT

                        *      *                        
       3107 TTGCATGCATCCGTAAGTGGAATTTGCATCTATATATATTCTTT
         62 TTGCATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTT

       3151 TGGTATATTC


Statistics
Matches: 96,  Mismatches: 9, Indels: 5
        0.87            0.08        0.05

Matches are distributed among these distances:
 114   29  0.30
 116   18  0.19
 117    9  0.09
 118   40  0.42

ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46


Consensus pattern (113 bp):   
TATAAATGTTGCTTCATACATCTCTAAGTGAAATGCGTGTATATATATTCTCTTTATATATTTGC
ATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTTCTATCTGT

Found at i:4918 original size:21 final size:21

Alignment explanation


    Indices: 4873--4918  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       4863 TACTATGTTT

                   *          *  
       4873 TTTTTTTGCTTGTCATTTGTA
          1 TTTTTTTCCTTGTCATTTCTA

                       *        *
       4894 TTTTTTTCCTTTTCATTTCTG
          1 TTTTTTTCCTTGTCATTTCTA

                
       4915 TTTT
          1 TTTT

       4919 GGGGTCCCTC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.07, C:0.13, G:0.09, T:0.72


Consensus pattern (21 bp):   
TTTTTTTCCTTGTCATTTCTA
Done.