Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02805.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6502
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:4536 original size:21 final size:21

Alignment explanation


    Indices: 4491--4536  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       4481 TACTATGTTT

                   *          *  
       4491 TTTTTTTGCTTGTCATTTGTA
          1 TTTTTTTCCTTGTCATTTCTA

                       *        *
       4512 TTTTTTTCCTTTTCATTTCTG
          1 TTTTTTTCCTTGTCATTTCTA

                
       4533 TTTT
          1 TTTT

       4537 GGGGTCCCTC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.07, C:0.13, G:0.09, T:0.72


Consensus pattern (21 bp):   
TTTTTTTCCTTGTCATTTCTA
Done.