Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00006.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3076
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:2522 original size:66 final size:66

Alignment explanation


    Indices: 2416--2550  Score: 225
    Period size: 66  Copynumber: 2.0  Consensus size: 66

       2406 CTGGATCTTT

                                                                       *  *  
       2416 AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACGCCTAC
          1 AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAAC

             
       2481 C
         66 C

                                     *    *              *                   
       2482 AGGCACTAGATTTGAAGCCAAACTATGTGCGTGCTTGGGCAAACATGGGTATCAGTTACACCAAC
          1 AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAAC

             
       2547 C
         66 C

               
       2548 AGG
          1 AGG

       2551 GTATGTATGA


Statistics
Matches: 64,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  66   64  1.00

ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21


Consensus pattern (66 bp):   
AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAAC
C
Done.